Mac OS için.svsdosyalarını açacak program ararken bulmuştum QuPath'ı.

QuPath'ın validasyonu kolon tümörlerinde CD3, CD8, p53 ve PD-L1 skorlaması yanısıra H&E preparatlarındaki tümör-stroma oranı ile yapılmış. Örnekler TMA üzerinde, kod ile ve otomatik analiz ile skorlanmış. Önemli bir nokta skorlamalar sağ kalım ile de karşılaştırılmış.

QuPath: Open source software for digital pathology image analysis
Scientific Reports volume 7, Article number: 16878 (2017)
doi:10.1038/s41598-017-17204-5

QuPath'ın oldukça iyi eğitim dökümanları var:

https://github.com/qupath/qupath/wiki

Makaledeki videolar şunlar:

MOESM2_ESM.mov

MOESM3_ESM.mov

Makalenin referans verdiği diğer dijital analiz araçlarının makaleleri ise şunlar:


https://digitalpathologyassociation.org/whole-slide-imaging-repository

https://digitalpathologyassociation.org/

  • Websites

https://pathpresenter.com/

http://www.rosaicollection.org/

http://cancer.digitalslidearchive.net/

Cancer Digital Slide Archive: an informatics resource to support integrated in silico analysis of TCGA pathology data

https://academic.oup.com/jamia/article/20/6/1091/703483

  • Johns Hopkins Pathology Unknowns

https://digital.pathology.johnshopkins.edu/repos/451

  • Softwares

http://www.virasoft.com.tr/

http://en.mydigipath.com/

https://qupath.github.io/

http://www.microvisioneer.com/

http://virtualvizyon.com/

https://easyzoom.com/

  • Easy Scanner

https://twitter.com/argenitt/status/814824189345624064

  • Smartphone Whole Slide Imaging(sWSI) Demo--Low Cost Slide Scanner.

https://www.youtube.com/watch?v=orcYKy19mjQ

https://micro-manager.org/

  • Google's interest in digital pathology is very important for our field. See 55th minute

https://youtu.be/Y2VF8tmLFHw?t=55m11s

https://research.googleblog.com/2017/03/assisting-pathologists-in-detecting.html

  • Detecting Cancer Metastases on Gigapixel Pathology Images

https://arxiv.org/abs/1703.02442

  • Manual Microscope Image Stitching

https://www.meyerinst.com/digital/image-stitching/

  • Motic EASY SCAN PRO Pathology Slide Scanner

https://www.meyerinst.com/motic-easy-scan-pro-digital-slide-scanner/

https://www.viewsiq.com/panoptiq

  • Metadata matters: access to image data in the real world

http://jcb.rupress.org/content/189/5/777

  • Detecting cancer in real-time with machine learning

https://www.youtube.com/watch?v=9Mz84cwVmS0

An Augmented Reality Microscope for Cancer Detection

An Augmented Reality Microscope for Real-time Automated Detection of Cancer

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